Showing : paired analysis • reset
1
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2
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.7 years ago Mozart ▴ 30
2
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4
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1.8k
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What's the best way to use "semi" technical replicates with biological replicates?
limma technical replicates biological replicates paired analysis
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 50
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871
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Paired DE analysis in edgeR with trios of samples while blocking for various confounders
edger rnaseq paired analysis design matrix
5.8 years ago svlachavas ▴ 840
0
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2
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883
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Comparing groups with paired samples by using limma
limma paired analysis
updated 5.9 years ago by 52k • written 5.9 years ago by • 0
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8
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1.2k
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Unexpected differences in results from paired analysis with DESeq2
DESEq2 paired analysis factor levels
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
5 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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