Bioconductor Paired analysis

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rna seq trimmomatic trimming adapter trimming paired analysis

5.9 years ago Mozart ▴ 30

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limma technical replicates biological replicates paired analysis

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by paul.alto ▴ 50

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edger rnaseq paired analysis design matrix

6.0 years ago svlachavas ▴ 840

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limma paired analysis

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by annadv77 • 0

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DESEq2 paired analysis factor levels

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by luisa.bresadola • 0

5 results • Page 1 of 1

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Answer: Having Trouble Using CNE12() and CNE21() in CNEr by 1324087964 • 0

![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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